Browse>2CV5:D

Detailed Infomation


Please click HERE for better display.

  • PDB: 2CV5

  • Chain: D

  • Protein Name: Histone H2B type 1-K

  • GeneName: HIST1H2BK

  • Resolution: 2.5 Å
  •        Method: X-RAY DIFFRACTION
PTM Information
PDBChain PTM Type PTM Position
in PDBChain
UniProt ACC PTM Position UniProtID Organism
2CV5:D Acetylation_K 117 O60814 117 H2B1K_HUMAN Homo sapiens (Human)
2CV5:D Ubiquitylation_K 117 O60814 117 H2B1K_HUMAN Homo sapiens (Human)
2CV5:D 2-hydroxyisobutyrylation_K 117 O60814 117 H2B1K_HUMAN Homo sapiens (Human)
2CV5:D Glycation_K 117 O60814 117 H2B1K_HUMAN Homo sapiens (Human)
2CV5:D Malonylation_K 117 O60814 117 H2B1K_HUMAN Homo sapiens (Human)
2CV5:D Succinylation_K 117 O60814 117 H2B1K_HUMAN Homo sapiens (Human)

Mutations affecting PTM Sites

Cancer mutations affecting PTM Sites
gene refseq mutation
Position
mutation
Alt
mutation
Summary
site Position site Residue uniprot ACC uniprot ID
HIST1H2BK NM_001312653 123 A STAD 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_080593 114 D COAD 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_001312653 114 D COAD 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_080593 110 Y DLBC 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_080593 114 K HNSC 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_080593 123 A STAD 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_080593 114 Q HNSC 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_001312653 110 Y DLBC 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_001312653 114 K HNSC 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_001312653 114 Q HNSC 117 K O60814 H2B1K_HUMAN


Population mutations affecting PTM Sites
gene refseq mutation
Position
mutation
Alt
mutation
Summary
site Position site Residue uniprot ACC uniprot ID
HIST1H2BK NM_080593 124 C 0.000199681 117 K O60814 H2B1K_HUMAN
HIST1H2BK NM_080593 112 M 0.000199681 117 K O60814 H2B1K_HUMAN

Secondary structure features calculated by DSSP

DSSPS results
PTM Position in Chain TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA
117 0.871 113.4 47.4 -64.2 -37.2 7.3 61.0 65.6

Relative accessibilities features calculated by NACCESS

NACCESSES results
PTM Position
in Chain
All-atoms Total-Side Main-Chain Non-polar All-polar
ABS REL ABS REL ABS REL ABS REL ABS REL
117 96.83 48.2 96.83 59.3 0.00 0.0 95.19 81.7 1.63 1.9

Protein Feature View

Sequence Alignment

Disorder picture

Select UniProt to view:

Click here to see the enlarged diagram

Sequence view